PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01094017G0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 163aa    MW: 17654.7 Da    PI: 11.1957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01094017G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.11.7e-214997355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr+++ +g+W+AeIrdp     + +r++lg+fgtaeeAa+a++aa+++++g
  PH01094017G0010 49 YRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFGTAEEAARAYDAAALRFKG 97
                     9*******.**********83....36************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-3248106IPR001471AP2/ERF domain
PfamPF008473.3E-154897IPR001471AP2/ERF domain
SMARTSM003808.5E-3448111IPR001471AP2/ERF domain
PROSITE profilePS5103225.44948105IPR001471AP2/ERF domain
PRINTSPR003674.0E-124960IPR001471AP2/ERF domain
CDDcd000188.90E-1849105No hitNo description
SuperFamilySSF541711.18E-2249106IPR016177DNA-binding domain
PRINTSPR003674.0E-127187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MARELPFLST GTVRPARRRK AAAPSATGTV ERGSPRGQGG GEEQARASYR GVRRRPWGKW  60
AAEIRDPAKA ARVWLGTFGT AEEAARAYDA AALRFKGAKA KLNFPSEAAA IAQQHRRHPR  120
QHPTASSSSS SWPPDPDIAP AVTEEFPDLR QYAHILQSGS DAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2249105663ATERF1
3gcc_A2e-2249105663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278394e-59KJ727839.1 Zea mays clone pUT5792 AP2-EREBP transcription factor (EREB116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390372.11e-34PREDICTED: ethylene-responsive transcription factor ERF113
SwissprotQ9FH548e-30EF114_ARATH; Ethylene-responsive transcription factor ERF114
SwissprotQ9LYU36e-30EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLA0A0D2TNJ26e-34A0A0D2TNJ2_G
TrEMBLD6MKQ26e-35D6MKQ2_9ASPA; Transcription factor (Fragment)
TrEMBLS8BXV54e-34S8BXV5_9LAMI; Uncharacterized protein
STRINGBRADI3G41543.11e-32(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-23related to AP2 6